Softwares

frma

Preprocessing and analysis for single microarrays and microarray batches.

frmaTools

Tools for advanced use of the frma package.

miRcomp

Based on a large miRNA dilution study, this package provides tools to read in the raw amplification data and use these data to assess the performance of methods that estimate expression from the amplification curves.

miRcompData

Raw amplification data from a large microRNA mixture / dilution study. These data are used by the miRcomp package to assess the performance of methods that estimate expression from the amplification curves.

microRNAome

This package provides a SummarizedExperiment object of read counts for microRNAs across tissues, cell-types, and cancer cell-lines.

nondetects

Methods to model and impute non-detects in the results of qPCR experiments.

spkTools

The package contains functions that can be used to compare expression measures on different array platforms.

ternarynet

A computational Bayesian approach to ternary gene regulatory network estimation from gene perturbation experiments.